Respected sir
Could you please clarify my doubt that among these four values which one we have to more preference (RMSD(Å),Seq.Id.%)'Eq.Pos.P-value) for selecting these four Structure's(2mdh:A,2mdh:B.1b8p:A,1dbm:A) for given example of advance modelling in modeller tutorial.
Really sorry for asking this same question again and again because i could not convince with your last messages and i hope this time you will clear my doubt.
thanks you somuch for your reply's
-----------------------------------------------------------------------------Multiple templates
The structure of the Malate Dehydrogenase 1bdm has been clustered in the DBAli database within the family fm00495 of 4 members (2mdh:A, 2mdh:B. 1b8p:Aand 1dbm:A). The multiple alignment generated by the command salign() in MODELLER is used in DBAli to generate a multiple structure alignment of the family. The alignment can be downloaded from the DBAli database or you can use the file `salign.py' to calculate it on your computer. -----------------------------------------------------------------------------