[modeller_usage] Adding glycans in AutoModel?

Dear Modeller Mailing List,

I was hoping to ask if there is a way to automate glycan-building in Modeller. I’ve been able to get all residues/atoms built using AutoModel. However, I lose the glycan information when using AutoModel. Is there another program that interfaces well with Modeller, or is there a class in Modeller that can add glycans at known positions (e.g. if I know NAG is attached to residue 6, can I add that to the PDB output somehow?).

Thank you! Steven Truong sdt45@cam.ac.ukmailto:sdt45@cam.ac.uk Cambridge University