Re: [modeller_usage] align_codes problem

On 2/11/11 8:52 AM, Tuğba Küçükkal wrote: > I am new to both Modeller and homology modeling, and trying to do a > simple modeling with the following script but I keep getting the error: > Protein specified in ALIGN_CODES(i) was not found in the alignment file; > ALIGN_CODES( 1) = proe

You call the template 'proe' in your Python script, but 'PROE' in your alignment file. Modeller is case-sensitive, so you need to change one of these. You will have the same problem with alp7/ALP7.

Ben Webb, Modeller Caretaker