Dear Sir/Madam,
I am modelling a heterodimeric structure from a heterodimeric template. I tried modelling it using separate chains but I am facing difficulty in building the complex. Is it possible to build a model using the complex structure as a whole (I did see a mention of using "/" as a chain separater in your archives for a homodimer)? If so, how do I specify the regions to be modelled?I have put an example of the regions:
query chain 1 length: 878 region aligning:1-827 template: chain B; actual region in pdb: 362-1335 ; region aligning;427-1335
query chain 2: length: 901 length aligning:59-848 template: chain A; actual region in pdb:1-855; length aligning;150-854
Awaiting your response. Thanking you, RAKSHAMBIKAI R PhD student Prof N Srinivasan's lab MBU,IISc Ph:080-22932837