Re: [modeller_usage] Help needed concerning the alignment file

doppelt olivia wrote: > I've been trying to use Modeller on an alignement file > obtained from a clustalw use. > I have the pdb file in the same repertory. > > I used a script, that i found in the examples files of > Modeller. > > When I try to use Modeller, > the following error is made : > rdpir___648E> Alignment sequence not found in PDB > file: 1 ./1tu7.pdb

1tu7 contains two chains: 'A' and 'B'. Your alignment does not specify a chain ID; give either A or B. See http://salilab.org/modeller/manual/node175.html

Ben Webb, Modeller Caretaker