[modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer

Apologies - I just found out that someone else asked basically the same question months prior: https://salilab.org/mm/hyperkitty/list/modeller_usage@salilab.org/thread/353...

I presume that in the second scenario, I'd have three templates, a la: temp1 AAAA/AAAA/BBBB/BBBB/BBBB* temp2 aaaa/----/----/----/----* temp3 ----/-----/bbbb/----/----* model aaaa/aaaa/bbbb/bbbb/bbbb*

What if I am modelling with ligands? Would the following be right? temp1 AAAA./AAAA/BBBB./BBBB/BBBB* temp2 aaaa-/----/----/----/----* temp3 ----/-----/bbbb-/----/----* model aaaa./aaaa/bbbb./bbbb/bbbb*

(The .pdb files for temp2 and temp3 have no ligands. Should the ligand be indicated? If so, with a "-" or "."?)