21 Apr
2016
21 Apr
'16
8 a.m.
On 4/21/16 2:42 AM, Prevost Martine wrote: > Below is the full input:
The full input would also include any alignment or PDB files; see https://salilab.org/modeller/9.16/manual/node10.html
> I don't understand the argument for GLUP in noH models. If the total > charge of GLUP is zero it should influence differently (compared to > Glu -1) the interaction of it with surrounding residues in the > construction of the model via the classical part of the force field > (Coulomb term)?
The Modeller forcefield doesn't contain a Coulomb term.
Ben Webb, Modeller Caretaker
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