Hi..
I am getting following when I first tried the tutoraial:
============== palomar (117) % mod6v0 model-default
sys-2 : UNRECOVERABLE error on system request No such file or directory
Encountered during an OPEN of unit 11 Fortran unit 11 is not connected IOT Trap /projects/nbcr/breddy/SOFTWARE/MODELLER/MODELLER6v0/modeller6v0/bin/mod6v0[41]: 495462 Abort ==================
Please help:
my modified tops file where I only changed the atom file directory
-------------- # Homology modelling by the MODELLER TOP routine 'model'.
INCLUDE # Include the predefined TOP routines
SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file SET ALNFILE = 'alignment.ali' # alignment filename SET KNOWNS = '5fd1' # codes of the templates SET SEQUENCE = '1fdx' # code of the target SET ATOM_FILES_DIRECTORY = '/projects/nbcr/breddy/SOFTWARE/MODELLER/MODELLER6v0/TEST' # directories for input atom files SET STARTING_MODEL= 1 # index of the first model SET ENDING_MODEL = 1 # index of the last model # (determines how many models to calculate)
CALL ROUTINE = 'model' # do homology modelling -----------