This must be a dumb error from my part, but I followed directions to run the scripts and now I'm getting a different error on all scripts. Here's the
output:
/modeller9v5/bin/modpy.sh python model-parallel.py Traceback (most recent call last): File "model-parallel.py", line 2, in ? from modeller import * File "/usr/people/trippm/bin/modeller9v5/modlib/modeller/__init__.py", line 59, in ? import _modeller ImportError: /usr/people/trippm/bin/modeller9v5/lib/x86_64-intel8/libmodeller.so.4: undefined symbol: __svml_cosf4
> python Python 2.3.4 (#1, Oct 13 2006, 15:53:00) [GCC 3.3.4 (pre 3.3.5 20040809)] on linux2
Same happens if I declare ENV Variables first: export -p PYTHONHOME=/usr/lib64/python2.3/ export MODINSTALL9v5=/modeller9v5 export EXECUTABLE_TYPE9v5=x86_64-intel8 export -p LIBS_LIB9v5=${MODINSTALL9v5}/modlib/libs.lib export KEY_MODELLER9v5=**** export -p PATH=${PATH}:${MODINSTALL9v5}/bin
On Thu, Dec 4, 2008 at 11:37 AM, Modeller Caretaker < modeller-care@salilab.org> wrote:
> Mauricio Carrillo Tripp wrote: > > I've just installed Modeller 9v5. I ran the examples in the automodel > > directory. All of them finished fine with the exception of > model-parallel. > > All of them output an "'import site' failed; use -v for traceback" > message > > though. > > See http://salilab.org/modeller/release.html#issues for your "import > site failed" warning. > > model-parallel failed because it requires the Python standard library. > > Both of these issues have the same solution - don't use the mod9v5 > script to run Modeller, but use "python" directly instead. See the > install instructions at that URL for more information. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage >