Hi All,
I am here with some problems which are not directly related to modelling. I want to use the MODELLER to draw Phylogenetic trees of some proteins from their struc tural comparisons. These proteins supposedly belong to a superfamily having less than 10% sequence identity. My problems are following:
1)Is there any ready script to achieve the above?
2)As an input to Phylip I need an alignment file after structural comparison where no target consensus sequence is needed. How to get that?
3)The structural comparison suggested here-is it a multifeatured one? If so, is there any literature reference containing a list of comparison parameters?
Please help. Debashis. ------------------------------------------------------------------------------ ("`-''-/").___..--''"`-._ `6_ 6 ) `-. ( ).`-.__.`) Debashis Mukhopadhyay (_Y_.)' ._ ) `._ `. ``-..-' Research Fellow,C&MB Div., _..`--'_..-_/ /--'_.' ,' Saha Institute Of Nuclear Physics, (il).-'' (li).' ((!.-' 1/AF, Bidhannagar,Calcutta-700 064. India. deb@cmb2.saha.ernet.in ------------------------------------------------------------------------------