Matt wagner wrote: > I was curious to know if I could refine only part of my model. I want > to make a 12 amino acid segment from a loop into an alpha helix without > changing the rest of the model. What I am trying to do is only make > certain parts of the model less solvent accessible.
Doesn't http://salilab.org/modeller/manual/node28.html do exactly what you want to do?
Ben Webb, Modeller Caretaker