5 May
2008
5 May
'08
3:29 p.m.
matziast@med.uth.gr wrote: > I am a new user of modeller9v3 and I can't write the first script with which I > will search for sequences similar to the target one. I also consult the manual > of modeller6v2, will I confuse?
Why would you want to do that? Use the Modeller 9v3 manual. The 6v2 manual is out of date.
> If I have understood well, the appropriate > command is sequence_search which has many options.
No, sequence_search is not the best way to do this any more. We recommend profile.build() instead. I suggest you work through the basic modeling tutorial on our website to understand how this works. But there are many ways to find templates - for example, you could do a BLAST search.
Ben Webb, Modeller Caretaker
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