Re: [modeller_usage] Error while running compare.py

On 11/20/12 8:24 AM, Anogna wrote: > But when gave compare.py.....i am get an error as follows ... > *IOError: pdbnam_____E> Filename for PDB code not found: 3d3l*

In order to do structural comparisons, Modeller needs the structures. Download the PDB files for each code in your script and put them in the same directory as your script.

Ben Webb, Modeller Caretaker