Re: [modeller_usage] How to make Modeller run Iteratively

On 2/6/11 10:49 PM, Ashish Runthala wrote: > Just like command line arguments are there in scripts, is it possible > to make MODELLER run iteratively, based on my defined set of > parameters integrated with MODELLER. If so, how. I want to use > Modeller in this way.

Of course. Modeller scripts are simply Python scripts, so you can write loops and create complex protocols. For example, the automodel protocol is simply a Python class (defined in modlib/modeller/automodel/automodel.py).

Ben Webb, Modeller Caretaker