Hi,
I am trying to use modeller8v1
on my windows machine to model my protein. but it keeps giving me this following
error. Though all the script file, alignment files and pdb files are in the same
directory as specified in the script file. Can some one suggest a
solution.
Thanks
Amin
openf5__224_>
Open 11 OLD SEQUENTIAL
$(LIB)/restyp.lib
openf5__224_> Open
11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/resdih.lib
rdrdih__263_> Number of dihedral angle
types
:
9
Maximal number of dihedral angle
optima:
3
Dihedral angle
names
: Alph Phi Psi Omeg chi1 chi2 chi3 chi4 chi5
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/radii.lib
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/radii14.lib
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/af_mnchdef.lib
rdwilmo_274_> Mainchain residue
conformation classes: APBLE
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/mnch.lib
rdclass_257_> Number of
classes: 5
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/mnch1.lib
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/mnch2.lib
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/mnch3.lib
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL8v1}/modlib/xs4.mat
rdrrwgh_268_> Number of residue
types: 21
runcmd______>
alignment.append(align_codes=['1FC4', 'SPT1ham'], atom_files=[],
file='alignment.ali', (def)remove_gaps=True, (def)alignment_format='PIR',
add_sequence=True, (def)rewind_file=False, (def)close_file=True)
openf___670E> Cannot open file alignment.ali: No
such file or directory