Hi, I need some help has follows.
I am using the script file as in example of pg 9 0f the User Manual. The error is given bellow:
bcramer@schrodinger:~/workdir-modeller9.1$ python runmodeller-test1.py File "runmodeller-test1.py", line 13 a = automodel(env, alnfile = ’alinha.pir’, knowns = ’4hpg’, sequence = ’bgl’) ^ SyntaxError: invalid syntax
script is as follows
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# -*- coding: utf-8 -*- from modeller import * from modeller.automodel import *
log.verbose() env = environ()
env.io.atom_files_directory = ['home/bcramer/workdir-modeller9.1']
env.io.hetatm = True env.io.water = True
a = automodel(env, alnfile = ’alinha.pir’, knowns = ’4hpg’, sequence = ’bgl’) a.starting_model = 1 a.ending_model = 5 a.make()
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OS-Ubuntu 18.4 64b Modeller v.9.21 -Python 2.7
Thank you
Bruno