P.S: When I tried using the same sequence for the alignment file, I received this message on the .log file:
read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = model_for_modeller.pdb
Thank you, Dana.
Quoting danashah@post.tau.ac.il:
> Hi all, > > I've only joined this mailing list lately, so pardon me if this > question was asked and answered before. > > We wish to perform energy minimization to a model we created. We > were wondering whether we can use your automodel for that, via "use > your own initial model": > http://www.salilab.org/modeller/manual/node26.html#SECTION:initialmodel > > If it's possible, what should be the alignment file, since the > sequence we want to use is the same as the model? > > Thank you, > Dana. > > __ > Dana Sachyani > Joel Hirsch's Lab > Faculty of Life Sciences > Tel Aviv University > Ramat Aviv, Israel > e-mail: danashah@post.tau.ac.il