Hi, all
I made two alignment files with a threading program other than
MODELLER.
How can I merge these two alignment files?
Each alignment file containts one query sequence and one
template sequence.
Query sequences from two alignment files are same to
each other and have different gaps.
Following sequences and gaps are made randomly.
file1: 1aaab.ali
>P1;source
sequence: query : 1: : 700: : target sequence: unknown:
:
MASNMLDS--------KFLDKLDFJLSDKFLKDFLSJFDLJFLKDJFLDKFLS*
>P1;1aaab
structure: 1aaab: 100: B : 800: B: template: known structure:
:
M-ASDFSAFDSADFSAFSDFSADFSAFSAD--ASDFASFDSAD--------*
file2: 1bbbc.ali
>P1;source
sequence: query : 1: : 700: : target sequence: unknown:
:
MASNMLDSKFLDKLDFJLSDKFLKD----------FLSJFDLJFLKDJFLDKFLS*
>P1;1bbbc
structure: 1bbbc : 40: C : 700: C : template: known structure:
:
M-ASDFSAFDSADFSAFSDFSADFSAFSAD--ASDFASFDSAD----------*
******MY TARGET ALIGNMENT
FORM*********************
>P1;source
sequence: query : 1: : 700: : target sequence: unknown:
:
MASNMLDSKF---LDKLDFJLSDKFLKD--FLSJFDLJFLKDJFLDKFLS*
>P1;1aaab
structure: 1aaab: 100: B : 800: B: template: known structure:
:
M-ASDFSAFDSADFSAFSDFSADFSAFSAD--ASDFASFDSAD-----*
>P1;1bbbc
structure: 1bbbc : 40: C : 700: C : template: known structure:
:
M-ASDFSAFDSADFSAFSDFSADFSAFSAD--ASDFASFDS-----AD*
******************************************************
Sincerely,
Kim