Re: [modeller_usage] automodel() known templates

On 3/15/10 3:47 AM, Rafik Ouerchefani wrote: > I'm following tutorials and the all-steps example. I would like to know > if there is a function or a method to automate the selection of the > templates to be used in automodel() as "knowns". In the examples, this > selection is done manually from matrix.mat or compare.log files.

Certainly, but it is not a simple one-line addin. Automatic selection of templates is difficult, and is the focus of much research. Our package to handle this is called ModPipe, and can be found at http://salilab.org/modpipe/

Ben Webb, Modeller Caretaker