Hi
I try to model a chimeric protein based on FAQ 4
To test the method I took a PDB file and cut it in two parts and then try to model the complete molecule again based on an FAQ 4
I get the error:
fit2xyz_E> number of equivalent positions < 3: 0 recover__> ERROR_STATUS >= STOP_ON_ERROR: 1 1
As I understand it there are not enough overlapping residues in the alignment. But that is exactly the point, I try to model a chimeric protein based on the independent fragments exactly as in FAQ 4.
What is wrong?
Does the templates have to be overlapping, and is FAQ 4 wrong?
All files are attached
Thanks in advance
Kim
------------------------------------------------------------------------ Kim Vilbour Andersen, PhD Senior Scientist Maxygen Agern Allé 1 DK-2970 Hørsholm Denmark <<model.top.gz>> <<align.pir.gz>> <<1GR3_A2.pdb.gz>> <<1GR3_A1.pdb.gz>> Tel: +45 7020 5550 Direct: +45 4517 8473 Mobile: +45 2637 3727 Fax: +45 7020 5530
E-mail: kva@maxygen.dk http://www.maxygen.dk/ ------------------------------------------------------------------------