Re: [modeller_usage] Including ligand from template

On 4/15/14, 11:40 PM, James Starlight wrote: > 1) what should I provide to the below ali.py script to copy HETATM from > the template to the model

This is done in the alignment file.

> 2) how salt bridges can be defined in the model taken from the > template with the homology cysteins in the same positions?

http://salilab.org/modeller/9.13/manual/node24.html

Ben Webb, Modeller Caretaker