Re: [modeller_usage] Modeller API

On 2/4/15 12:14 AM, Mouses Stamboulian wrote: > ​Hi, I'm a student at the Lebanese American University and I was > wondering if there is an API for Modeller.

http://salilab.org/modeller/9.14/manual/node477.html

> I want to use modeller in my > java code. am I able to call modeller methods through Java? for instance > feed the program with two alignments and give a command in my java code > to model the 3D strcutre.

For this sort of high-level usage, you might find it easier to use the Python interface (either by generating a little Python script or by using some sort of direct Java to Python interface like Jython).

Ben Webb, Modeller Caretaker