Manoel, I have recently started using modeller and also have Vista. I created a folder under my username and put all my script and atom etc. files in it. I left the modeller9v7 folder in the program files directory it was installed into. I run modeller from the start menu and use the cd command to change to the directory with my script files. This setup has been working for me.
Justin
Quoting "Manoel Arcisio-Miranda" <manoelarcisio@yahoo.com.br>:
> Dear Ben,
>
> thanks for the information.
> I did it, but another problem started.
>
> I moved the Modeller9v7 folder to Desktop and now when I tried to run
> the command mod9v7, the following message appears:
>
> 'mod9v7' is not recognized as an internal or external command,
> operable program or batch file.
>
> I also tried to move Python 26 in the same folder. However, it stops
> to work. In addition, when Python is in Program files folder and I
> try to run some example from Modeller (for example:
> salign_multiple.py) using IDLE, I got the following message:
>
> Import Error: no module named modeller
>
> So, what should I do? I'm sorry, but I'm really confused how to use
> Modeller in the Windows Vista platform.
>
> Thanks so much,
>
> Manoel
>
>
>
>
>
>
> ________________________________
> De: Modeller Caretaker <modeller-care@salilab.org>
> Para: Manoel Arcisio-Miranda <manoelarcisio@yahoo.com.br>
> Cc: modeller_usage@salilab.org
> Enviadas: Seg, Outubro 26, 2009 1:24:31 PM
> Assunto: Re: [modeller_usage] Permission denied message
>
> Manoel Arcisio-Miranda wrote:
>> I am beginner in modeling of proteins. I downloaded the Modeller 9v7
>> (Windows package) and I am following the tutorials. I just started
>> the Basic Modeling tutorial, but when I type any command at the
>> command line, for example: mod9v7 build_profile.py, the following
>> message appear:
>>
>> Cannot open logfile build_profile.log: Permission denied
>
> See step 6 at http://salilab.org/modeller/9v7/release.html#windows
>
> Windows Vista has stricter security than older versions of Windows;
> it won't let you write into a directory that you don't own, so it
> won't let Modeller create log files there (or any other output files,
> such as models). Make a new directory, put the files there, use the
> 'cd' command to change into it, and then run 'mod9v7'. Don't run
> things directly out of the Modeller install directory.
>
> Ben Webb, Modeller Caretaker
> -- modeller-care@salilab.org http://www.salilab.org/modeller/
> Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
>
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