My template is single ...

The generated output models (i created 10 moedls with modeller)  the model  with best energy has some area leaning out of the structure which seems to be not included in the protien ....(When Viewed with Swiss pdb Viewer)

 

How could i made it fit to the alignment with template.

i m attaching that output file with it.

its a sequence of a Baffalo family (Nili ravi);

Thanx!

--
Zartasha Mustansar.

Sky May be the limit for others ! But it is just The Beginning For Us..! ( ~ Islamians..)
-----------------------------(The competitive Bio-Informaticians ! )--------------------------