Re: [modeller_usage] BLK usage => mainy chains

On 1/24/11 6:56 AM, Isaure Chauvot de Beauchene wrote: > I try to build a modele with 2 protein templates. I want to modelise > just one loop of 1pkg, part of it on the template 3A2M, the rest of the > loop de novo. The rest of 1pkg must not be changed, so I put it as BLK:

BLK residues are really designed for modeling ligands and other things that are not proteins. If you only want Modeller to optimize part of your protein, see http://salilab.org/modeller/9v8/manual/node23.html

Ben Webb, Modeller Caretaker