On Fri, Nov 19, 2004 at 09:33:50AM +1000, Praveen Madala wrote: > Hi, > I am trying to model a protein with a restrain file > > MODELLER6v2 VERSION: USER FORMAT
This is not a valid restraints file. See http://salilab.org/modeller/7v7/manual/node100.html
For user format, the first line should be MODELLER5 VERSION: USER FORMAT
> R 3 1 1 21 2 2 0 7.1000 > 0.3387 SG:140 SG:222
If this really is on two lines in your restraints file, it won't work. Modeller expects each restraint to be on one line.
> as I mensioed before, the program is not identifying the > the SG:140 CG:211, I think it is not identifying gama > atoms......I dont know that how i am writing the gamma > atom is wrong ???
There's no way to tell that unless you send the rest of your input files.
Ben Webb, Modeller Caretaker