Dear Modeller users,
I am trying to use the model-loop.py script:
Homology modeling by the automodel class from modeller import * from modeller.automodel import * # Load the automodel class
log.verbose() env = environ()
# directories for input atom files env.io.atom_files_directory = './:../atom_files'
a = loopmodel(env, alnfile = 'Sirt1-multi.ali', # alignment filename knowns = '1j8fAA','1j8fBB','1j8fCC','1q1aA','1yc5A','2od7A' # codes of the templates sequence = 'Sirt1' ) # code of the target a.starting_model= 1 # index of the first model a.ending_model = 1 # index of the last model # (determines how many models to calculate) a.md_level = None # No refinement of model
a.loop.starting_model = 1 # First loop model a.loop.ending_model = 4 # Last loop model a.loop.md_level = refine.fast # Loop model refinement level
a.make() # do homology modeling
but i am getting the error
'import site' failed; use -v for traceback File "model-loop.py", line 14 sequence = 'Sirt1' ) # code of the target ^ SyntaxError: invalid syntax
Could someone tell me how to figure out this error?
thank you in advance
Best Regards, Urszula Uciechowska
MSc.PhD Student Medicinal Chemistry Group University of Halle-Wittenberg