On Wed, Jul 14, 2004 at 07:16:24AM +0100, shantanu gautam wrote: > I am doing research at IIT Kharagpur on modeling retrotransposable genes. > I faced severe problem while running Widows based modeller version. The > steps I had followed for running modeller is > > 1) generated alignment file as .ali file > > 2) generated pdb display file and structure file as pdb format. > > 3) Model-default > > 4) Then I run the modeller from the command prompt but after giving > mod.bat model-default.top it was showing error Len,string: > D:\sh\modeller6v2\bin\sg\ > > 5) The folder containing the modeller is sh and sg is folder in > which we are working.
1. Run modeller with 'mod.bat model-default.top > model-default.log'. 2. Send me model-default.top, model-default.log, and any other input files you used (i.e. .ali file and PDB file).
Without seeing your input files, it's extremely hard to diagnose your problem.
Ben Webb, Modeller Caretaker