Torsten Stauder wrote: > Read the alignment from file : alignment_final.ali > Total number of alignment positions: 426 > > # Code #_Res #_Segm PDB_code Name > ------------------------------------------------------------------------------- > 1 a627 426 1 a627 FLT3 mutated ITD > 2 1rjb 344 1 1rjb FLT3 wild type > runcmd______> alignment.check() > > check_a_343_> >> BEGINNING OF COMMAND > check_a_337E> Structure not read in (please consult the log file > for more details): 1 a627
That's odd - there should be a more descriptive error message in the log file. If you can send me your input files (alignment_final.ali, and the PDB file you're using for a627) then I can take a look.
> Another question: Do I have to provide my sequence to be modelled a > .pdb-file using "0.00" as coordinates or is it sufficient to provide > it as .fasta?
You only need the sequence, in a PIR file.
Ben Webb, Modeller Caretaker