https://salilab.org/mm/hyperkitty/list/modeller_usage@salilab.org/thread/H56... On Thursday, August 31, 2023, Joel Subach mjsubach@alumni.ncsu.edu wrote:
> ...and below is a link to the Modeller UsageHelp Forum indicating a > methodology that I had used successfully to loop missing residue model via > constraining the rest of the heptamer given residues successfully i.e. > missing residue loop modeling within the Modeller website (although it > maybe called something different). Good Luck:) > On Thursday, August 31, 2023, Joel Subach mjsubach@alumni.ncsu.edu > wrote: > >> Hi Arun how many residues in each chain total >> and how many residues are missing in each chain >> that need to be modeled? Best, Joel >> >> On Thursday, August 31, 2023, Ajasja Ljubetič via modeller_usage < >> modeller_usage@salilab.org> wrote: >> >>> I think the only trick is not forgetting the chain break in the ali file: >>> https://salilab.org/modeller/manual/node29.html >>> >>> Best, >>> Ajasja >>> >>> PS: It's a very broad question, so I can only give a broad reply. >>> >>> On Thu, 31 Aug 2023 at 09:12, Arun Dhanasekaran via modeller_usage < >>> modeller_usage@salilab.org> wrote: >>> >>>> i tried a build a homology model of a heterodimer protein,since it >>>> contains missing residue i have to model that. But i am only familiar >>>> with single chain homology modelling and fro multi chain i am getting many >>>> errors like in greeting ali flie. and from tutorial also i am not getting >>>> everything clearly. can i get a detailed explantiojn on multi chain >>>> modelling >>>> >>>> _______________________________________________ >>>> modeller_usage mailing list >>>> modeller_usage@salilab.org >>>> https://salilab.org/mm/postorius/lists/modeller_usage.salilab.org/ >>> >>>