On Wed, Jul 21, 2004 at 01:40:39AM -0700, daniele bemporad wrote: > Many thanks for your reply. My restraint file looks > like: > MODELLER5 VERSION: MODELLER FORMAT > R 3 1 1 27 2 2 0 3077 3088 > 6.5977 0.1000 > R 3 1 1 27 2 2 0 3077 3089 > 7.7258 0.1000 > R 3 1 1 27 2 2 0 3077 3093 > 8.8338 0.1000
I'm assuming your mail client has wrapped those lines - each 'R' line should be a single line, not two.
> Just to be clear: I have made sure that my distance restraints > don't collide with the homology-derived ones.
That shouldn't be an issue - at least, such an overlap shouldn't make Modeller crash - at worst, you'll get a poorly optimized solution.
Please send all of the necessary inputs to me at modeller-care@salilab.org, and I'll take a look. It is extremely hard to diagnose your problem unless I can reproduce it in the lab.
Ben Webb, Modeller Caretaker