jinlian05@lzu.cn wrote: > I am new to modeller and I have trouble creating a homology model of a > protein using multiple template. During making model,it appares model error, > structure not read in.I would appreciate it if any one can give me any > suggestion. > Thanks! > log file: > runcmd______> alignment.append(align_codes=['1u19', '1PFC', '1BGY', '1AVQ', > '1ARP', 'ccr'], atom_files=[], file='multiccr.ali', (def)remove_gaps=True, > (def)alignment_format='PIR', (def)rewind_file=False, (def)close_file=True) > readlinef__W> File: 1u19.pdb, Line: 1371 > Modeller will only read the first 80 characters of this line. > readlinef__W> File: 1u19.pdb, Line: 1371 > Modeller will only read the first 80 characters of this line. > read_pd_702E> File: 1u19.pdb, Line 1371 > Could not parse data from file; file is probably corrupt. > read_te_288W> Protein not accepted: 1 1u19 > rdabrk__337E> Structure not read in (please consult the log file > for more details):
The error says that your PDB file is corrupt. What does line 1371 of 1u19.pdb look like?
Ben Webb, Modeller Caretaker