[modeller_usage] questions concerning hydrogen in optimization

Dear Laurent,

I have a question regarding optimization using "cg.optimize". The optimized structures/proteins produced after using this function are always without hydrogens. So does this mean that: The optimization procedure removes hydrogens and does not use them during the optimization steps?If the above is true, is there a way to conduct optimization with hydrogens included? Thanks in advance, Abdullah _________________________________________________________________ Windows Live Hotmail: Your friends can get your Facebook updates, right from Hotmail®. http://www.microsoft.com/middleeast/windows/windowslive/see-it-in-action/soc...