Hi Ben,

That worked. I was able to generate the "mod9.12" script inside /bin directory of modeller 9.12 under $MODPIPE/ext/mod/.

However, when I run a test under /tests, I get the following error:

> make
**************************************************************************

cd unit && ../../int/runscript.sh python run-all-tests.py -v > /dev/null
/bin/sh: ../../int/runscript.sh: No such file or directory
make: *** [unit] Error 127
**************************************************************************

Where is this ../../int/runscript.sh script? The /int directory is empty!

Also, when I run a demo under /demo, I get this error:
**************************************************************************
Traceback (most recent call last):
File "AddSeqMP.py", line 17, in <module>
import modpipe.version
ImportError: No module named modpipe.version
**************************************************************************

Any thoughts on what I may be doing wrong? I have tried to follow installation instructions for MODPIPE as closely as possible:
http://salilab.org/modpipe/doc/intro.html#getting-modpipe

Thanks very much,

Amjad

---------- Forwarded message ----------
From: Ben Webb <ben@salilab.org>
Date: Fri, Oct 18, 2013 at 12:15 PM
Subject: Re: [ModPipe-users] Installation Issues
To: Help and discussion for users of ModPipe <modpipe-users@salilab.org>
Cc: Amjad Farooq <amjad@farooqlab.net>

On 10/17/13 7:50 PM, Amjad Farooq wrote:

How does one install MODELLER 9.12 inside ModPipe? I have MODELLER 9.12
installed on a linux machine and it runs fine. But, I am having some
issues with installing MODELLER 9.12 inside ModPipe.

Download the Modeller .tar.gz installer, run the Install script, and tell it to install in $MODPIPE/ext/mod/. Once that's done, there should be a mod9.12 script in the bin subdirectory.

Is there a way to tell ModPipe to read in automatically pre-installed
MODELLER 9.12 at another location

No, but you could probably make it work with some symlinks if you really don't want to have two copies of Modeller.

Ben
--
ben@salilab.org http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle