Hi,
But is modeller who is generating this file adsl.B99990001.pdb. I couldnt find any parameter to set this file name.
I just need three files: the script file (mod.py), the align file ( align.ali) and the template structure (1c3c.pdb)
The PDB named adsl.B99990001.pdb that modeller cant find is a pdb file
generated by it own. as far as I know, modeller generates the models
using first the sequence name a putting after it the code B99990001.pdb
for the first structure, B99990002.pdb to the second and so on.
Modeller generates initials files, but not this one that he couldnt find.
Ricardo.
On 10/10/05, Riadh HAMMAMI <riadh.hammami@fst.rnu.tn> wrote:
Hi,
>Running Modeller8v1 I am getting the following error message:
>IOError: openf5__225E> File does not exist: file-not-found
>pdbnam__217W> Filename for PDB code not found: adsl.B99990001.pdb
> Directories: ./
> Extensions
: :.atm:.pdb:.ent:.crd
>openf5__224_> Open 11 OLD SEQUENTIAL file-not-found
>openf5__225E> File does not exist: file-not-found
Does anyone have a suggestion why it is happening !?
You should take about DOS extensions: rename your file for example
(adsl_B99990001.pdb), it should be only one ".pdb" extension. Also make
attention for the subdirectory you put the PDB file,
env.io.atom_files_directory
= './:../atom_files/'
Hope this help,
Riadh HAMMAMI
UNIVERSITY OF TUNIS EL MANAR, TUNISIA
--
Ricardo de Paula Nicoluci
PhD Student
Medicinal Chemistry Laboratory
IFSC - University of Sao Paulo
Sao Carlos - SP - Brazil