Dear James, You search for Salign_*.py scripts in MODELLER and then you can integrate both the templates. However, you need to include both the template to later curate the alignment file as per your fusion consideration requirement.
Regards Ashish
Ashish Runthala, Lecturer, Structural Biology Cell, Biological Sciences Group, BITS, Pilani Rajasthan, INDIA
----- Original Message ----- From: "modeller usage-request" modeller_usage-request@salilab.org To: "modeller usage" modeller_usage@salilab.org Sent: Wednesday, 8 August, 2012 18:57:12 GMT +05:30 Chennai, Kolkata, Mumbai, New Delhi Subject: modeller_usage Digest, Vol 11, Issue 83
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Today's Topics:
1. Re: struggling to make structure predictions (Modeller Caretaker) 2. Template PDB files (Nanda Pandey) 3. Re: Template PDB files (Modeller Caretaker) 4. Modelling of Chimeric protein (James Starlight)
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Message: 1 Date: Mon, 06 Aug 2012 18:22:09 -0700 From: Modeller Caretaker modeller-care@salilab.org To: "Adhikari, Badri (MU-Student)" bap54@mail.missouri.edu Cc: "modeller_usage@salilab.org" modeller_usage@salilab.org Subject: Re: [modeller_usage] struggling to make structure predictions Message-ID: 50206DC1.10905@salilab.org Content-Type: text/plain; charset=ISO-8859-1; format=flowed
On 8/6/12 2:24 PM, Adhikari, Badri (MU-Student) wrote: > I am struggling to write a python program that takes protein sequence as > input and produces some conformations as the output (with no any other > input data).
The scripts you've attached are IMP scripts. This is the Modeller mailing list. You'd probably have more luck on the IMP mailing list.
Ben Webb, Modeller Caretaker