Re: [modeller_usage] R: modelling discarding part of a template

On 08/31/2010 08:25 AM, Thomas Evangelidis wrote: > Is it algorithmically difficult to add a function that will select a > range of residue in one template and Modeller will exclude them without > touching the alignment? When having multiple templates and several > unwanted regions this procedure becomes very tedious.

That is certainly a possibility for a future release. You can get something similar in the meantime by writing a simple Python script that reads in the model, makes a selection excluding the regions you don't like, then writes out the selection to a new PDB file which you then use for automodel.

Ben Webb, Modeller Caretaker