On 2/16/11 11:53 AM, albert wrote: > I would like to build a model staring from my own model. but it didn't > work, it is said: > > -------log-------------- > _modeller.ModellerError: rdpdb___303E> No atoms were read from the > specified input PDB file, since the starting residue number and/or chain > id in MODEL_SEGMENT (or the alignment file header) was not found; > requested starting position: residue number " ", chain " "; atom file > name: init.pdb > -------------------------- > > In fact in the alignment file I already add something like this: > > -------------------align---------------------------- > >P1;seq > sequence:seq: : : : ::: 0.00: 0.00
The initial model corresponds to this sequence in your alignment file, so you need to make sure that the residue/chain IDs in the alignment file header match those in the PDB.
Ben Webb, Modeller Caretaker