Re: [modeller_usage] Modeling a missing loop without any template strand

On 9/20/12 3:19 AM, Sajeewa Pemasinghe wrote: > I am quite new to modeller (My first time posting). I have a pdb file in > which a loop (11 residues long) is missing. I DO NOT have a template > strand which contains these missing residues. Can I use modeller to > build these for me from scratch?

Sure. This is very similar to the example in the wiki: http://salilab.org/modeller/wiki/Missing%20residues

Ben Webb, Modeller Caretaker