Hello People<br><br>I know this has been raised before but when looking through the archieves I could'nt find an answer to this problem, I've redone all the tutorials and out of ideas, so please can somebody help with this error message I'm getting?<br><br>'import site' failed; use -v for traceback<br>Traceback (most recent call last):<br>&nbsp; File "modeller.top.py", line 18, in ?<br>&nbsp;&nbsp;&nbsp; a.make()&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; # do the actual homology modeling<br>&nbsp; File "/home/fraizerangus/bin/modeller9v2/modlib/modeller/automodel/automodel.py", line 99, in make<br>&nbsp;&nbsp;&nbsp; self.homcsr(exit_stage)<br>&nbsp; File "/home/fraizerangus/bin/modeller9v2/modlib/modeller/automodel/automodel.py", line 399, in homcsr<br>&nbsp;&nbsp;&nbsp; aln = self.read_alignment()<br>&nbsp; File
 "/home/fraizerangus/bin/modeller9v2/modlib/modeller/automodel/automodel.py", line 389, in read_alignment<br>&nbsp;&nbsp;&nbsp; aln.append(file=self.alnfile, align_codes=self.knowns+[self.sequence])<br>&nbsp; File "/home/fraizerangus/bin/modeller9v2/modlib/modeller/alignment.py", line 74, in append<br>&nbsp;&nbsp;&nbsp; rewind_file, close_file)<br>_modeller.error: read_al_373E&gt; Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES(&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 1) =&nbsp; 1CPG<br><br>Many Thanks<br><br>Dan<br><br><br>