regarding S-S bridges I've understood well the method of the manual S-S bond definition using model.patch() method. On other hand I wounder to know how alternative  model.patch_ss_templates() method could be implemented taking S-S from the templates. For instance using modeller advanced tutorial I've obtained results of the multiple-sequence alignment with the inclusion of the aligned sequence + several temples sequences (this output alignment is produced reasonable model). Next I used patch_disulfides.py example with this alignment to obtain  stereochemical restraints.

# Create the disulfide bonds using equivalent disulfide bonds in templates:
mdl.patch_ss_templates(aln)

# Create the stereochemical restraints
sel = selection(mdl)
mdl.restraints.make(sel, restraint_type='stereo', spline_on_site=False)

 Now how I could perform such restrains-guided modelling to build model with the S-S bridges?