hai dear modeller while running the modeller i got the error below can u suggest me how to rectify thanking you MODELLER 7v7, Sep 12, 2004 09:15pm
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2004 Andrej Sali All Rights Reserved
Written by A. Sali with help from B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A. Marti-Renom, N. Eswar, F. Alber, B. Oliva, A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington, E. Feyfant University of California, San Francisco, USA Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, Linux hcl4 2.4.20-8 i686 Date and time of compilation : 09/12/2004 21:24:59 Job starting time (YY/MM/DD HH:MM:SS): 2005/03/18 16:25:06.597
TOP_________> 109 749 SET ALNFILE = 'alignment.ali'
TOP_________> 110 750 SET KNOWNS = 'pdb1lox'
TOP_________> 111 751 SET SEQUENCE = 'HUMAN'
TOP_________> 112 752 SET STARTING_MODEL = 1
TOP_________> 113 753 SET ENDING_MODEL = 1
TOP_________> 114 754 CALL ROUTINE = 'model'
TOP_________> 115 419 CALL ROUTINE = 'getnames'
TOP_________> 116 534 STRING_IF STRING_ARGUMENTS = MODEL 'undefined', OPERATI ON; = 'EQ', THEN = 'STRING_OPERATE OPERATION = CONCATENA; TE, STRING_ARGUMENTS = SEQUENCE .ini, RESULT = MODEL'
TOP_________> 117 535 STRING_IF STRING_ARGUMENTS = CSRFILE 'undefined', OPERA TI; ON = 'EQ', THEN = 'STRING_OPERATE OPERATION = CONCATE; NATE, STRING_ARGUMENTS = SEQUENCE .rsr, RESULT = CSRFILE; '
TOP_________> 118 536 STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = SEQUENCE '.sch', RESULT = SCHFILE
TOP_________> 119 537 STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = SEQUENCE '.mat', RESULT = MATRIX_FI; LE
TOP_________> 120 538 SET ROOT_NAME = SEQUENCE
TOP_________> 121 539 RETURN
TOP_________> 122 420 CALL ROUTINE = 'homcsr'
TOP_________> 123 112 READ_ALIGNMENT FILE = ALNFILE, ALIGN_CODES = KNOWNS SEQ UE; NCE
Dynamically allocated memory at amaxseq [B,kB,MB]: 84067 82. 097 0.080 openf5__224_> Open 20 OLD SEQUENTIAL alignment.ali openf5__224_> Open 13 OLD SEQUENTIAL ./pdb1lox.pdb
Dynamically allocated memory at amaxbnd [B,kB,MB]: 10758819 10506. 659 10.260 openf5__224_> Open 20 OLD SEQUENTIAL alignment.ali openf5__224_> Open 13 OLD SEQUENTIAL ./pdb1lox.pdb rdpir___648E> Alignment sequence not found in PDB file: 1 ./pdb1lox.pdb recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 10758819 10506. 659 10.260 Starting time : 2005/03/18 16:25:06. 597 Closing time : 2005/03/18 16:25:07. 194 Total CPU time [seconds] : 0.59
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