hi all
iam a fresher working on modeller and nothing is going on here properly . i use a win me machine with mod6v2 installed. i tried an alignment file to model but its not working .i have included the top files for reference
INCLUDE # Include the predefined TOP routines
SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file
SET ALNFILE = 'alignmentfile.ali' # alignment filename
SET KNOWNS = '1HM9' # codes of the templates
SET SEQUENCE = 'query' # code of the target
SET ATOM_FILES_DIRECTORY = 'c:/mod6v2/bin/1hm9.pdb'
# directories for input atom files
SET STARTING_MODEL= 1 # index of the first model
SET ENDING_MODEL = 1 # index of the last model
# (determines how many models to calculate)
CALL ROUTINE = 'model' # do homology modelling
i dont know what does this atom_files mean.plz explain
the ERROR it shows is as follows:
openf5___224_>open 11 OLD SEQUENTIAL alignmentfile.ali
rdpir___376W>not enough fields in the sequence line of the sequence entry:sequence:query:1::165 : :
actual fields should be: 7 10
(Fields are separated by a colon. :)
read_al_375E>unknown residue type,Position , Sequence: 1 1
recover_____E>ERROR_STATUS=>STOP_ON_ERROR 1 1
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