My .top file is:
--------------------------------------------------------------------------------------------------------------
INCLUDE
SET OUTPUT_CONTROL = 1 1 1 1 1
SET
SEARCH_RANDOMIZATIONS = 3
SET FILE = 'TvLDH.ali'
SEQUENCE_SEARCH
ALIGN_CODES = 'TvLDH', DATA_FILE = ON
-----------------------------------------------------------------------------------------------------------------
the log file is:
----------------------------------------------------------------------------------------------------------------
MODELLER 6v2, 17 Feb 2002
PROTEIN STRUCTURE
MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2002 Andrej
Sali
All Rights
Reserved
Written by A.
Sali
with help from A.
Fiser, R. Sanchez, M.A. Marti-Renom,
B. Jerkovic, A. Badretdinov, F.
Melo,
J.P. Overington & E.
Feyfant
Rockefeller University, New York,
USA
Harvard University, Cambridge,
USA
Imperial Cancer Research Fund, London, UK
Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, Linux bioinf4 2.4.4-4GB
i686
Date and time of
compilation : 05/24/2002
09:27:23
Job starting time (YY/MM/DD HH:MM:SS): 2002/09/23
15:16:01.528
TOP_________> 105 705 SET SEARCH_RANDOMIZATIONS = 3
TOP_________> 106 706 SET FILE = 'TvLDH.ali'
TOP_________> 107 707 SEQUENCE_SEARCH
ALIGN_CODES = 'TvLDH', DATA_FILE = ON
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
Dynamically allocated memory
at amaxchn
[B,kB,MB]: 2306323
2252.269 2.199
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL6v2}/modlib//CHAINS_all.seq
Dynamically allocated memory
at amresdb
[B,kB,MB]: 5689471
5556.124 5.426
openf5__224_>
Open 11 OLD SEQUENTIAL
${MODINSTALL6v2}/modlib//CHAINS_all.seq
Dynamically allocated memory
at amaxseq
[B,kB,MB]: 5877209
5739.462 5.605
Dynamically allocated memory
at amaxbnd
[B,kB,MB]: 110299725 107714.600
105.190
openf5__224_> Open 11
OLD SEQUENTIAL
${MODINSTALL6v2}/modlib//as1.sim.mat
rdrrwgh_268_> Number of residue
types: 20
openf5__224_>
Open 11 OLD SEQUENTIAL
TvLDH.ali
---------------------------------------------------------------------------------------------------------------------------------------------------------------
After 2 hours of executing delivery the following mistake
The error is:
/usr/local/modeller6v2/bin/mod6v2 : line38 : 2030 terminated
$NICE ${EXECUTABLE} $STEERF
>$LOGF
WHAT IS A PROBLEM???