Hi: When I use my initial model to build the structure, it appears some erros, the following is the scripts and log file: from modeller import * from modeller.automodel import * log.verbose() env = environ() env.io.atom_files_directory = './:../atom_files' a = automodel(env, alnfile = 'bhro_mult.ali', knowns = ('bhro_n','bhro_tm','bhro_c'), sequence = 'bhro', inifile = 'myini.pdb')
a.starting_model= 1 a.ending_model = 1 a.make()
some errors in log file: rdpdb___303E> No atoms were read from the specified input PDB file, since the starting residue number and/or chain id in MODEL_SEGMENT (or the alignment file header) was not found; requested starting position: residue number " ", chain " " read_te_288W> Protein not accepted: 1 myini.pdb rdabrk__337E> Structure not read in (please consult the log file for more details): now, how does MODELLER to do this question? thanks a lot!