Hi<br>
<br>
After having built my models, i have decided to assess them using the ga341 score. the script i am using is:<br>
<br>
# Example for: model.assess_ga341()<br>
<br>
env = environ()<br>
<br>
# Read a model previously generated by Modeller's automodel class<br>
mdl = model(env, file='.59.pdb')<br>
<br>
# Set template-model sequence identity. (Not needed in this case, since<br>
# this is written by Modeller into the .pdb file.)<br>
mdl.seq_id = 30.174<br>
<br>
score = mdl.assess_ga341()<br>
<br>
the ouput of this script for two different models is:<br>
<br>
model1<br>
% sequence identity&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp; 30.174000<br>
Sequence length&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 531<br>
Compactness&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp;&nbsp; 0.270804<br>
Native energy (pair)&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp; -225.273799<br>
Native energy (surface)&nbsp; :&nbsp;&nbsp; -13.946407<br>
Native energy (combined) :&nbsp;&nbsp;&nbsp; -6.357012<br>
Z score (pair)&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp; -9.813731<br>
Z score (surface)&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp; -7.147611<br>
Z score (combined)&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp; -11.464915<br>
GA341 score&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp;&nbsp; 1.000000<br>
<br>
model2<br>
% sequence identity&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp; 30.174000<br>
Sequence length&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 531<br>
Compactness&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp;&nbsp; 0.256617<br>
Native energy (pair)&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp; -268.422282<br>
Native energy (surface)&nbsp; :&nbsp;&nbsp; -16.727187<br>
Native energy (combined) :&nbsp;&nbsp;&nbsp; -7.618686<br>
Z score (pair)&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp; -9.969647<br>
Z score (surface)&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp; -7.755271<br>
Z score (combined)&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp; -12.156111<br>
GA341 score&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; :&nbsp;&nbsp;&nbsp;&nbsp; 1.000000<br>
<br>
how do i interpret these outputs? should both scores be 1?<br>
<br>
Jo<br>
<br>