Dear All,
Along with greeting them cordially.
I have the following error using modeller 10.5. in linux operating system. I have added the restyp RTN, retinal with % symbol in the restyp.lib file in the modlib folder but I still have this error.
What else could I do to solve this error.
Thank you.
mod10.5 align1.py
Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
'import site' failed; use -v for traceback
Traceback (most recent call last):
File "align1.py", line 56, in ?
a.make() # do homology modeling
File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line 141, in make
self.homcsr(exit_stage)
File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line 611, in homcsr
aln = self.read_alignment()
File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line 572, in read_alignment
aln.append(file=self.alnfile, align_codes=codes)
File "/usr/lib/modeller10.5/modlib/modeller/alignment.py", line 82, in append
allow_alternates)
_modeller.ModellerError: read_al_375E> Unknown residue type,position,sequence: % 334 1
-- Víctor E. Rojas Pérez, Msc.
Estudiante Doctorado en Biotecnología Traslacional
Universidad Católica del Maule
Facultad de Ciencias Agrarias y Forestales