Re: [modeller_usage] query??

madhurima das wrote: > I am using Modeller (Mod8V1 on OS X) to add missing > residues to some pdb structures. While it worked for > many structures, for some, I am getting an error > (while reading the sequence (aligned) files: > > openf___224_> Open seq.ali > str_sn5___E> increase MAXN: 15 > > Can anyone please tell me what is the problem? Looks > like I have to increase some parameter MAXN. What is > is this parameter and where and how can I increase it?

The message is a little cryptic, but it means that you have too many colons (':') in your alignment file header. There should be only 10 colon-separated fields. See http://salilab.org/modeller/manual/node175.html

Ben Webb, Modeller Caretaker