15 Oct
2013
15 Oct
'13
11:54 a.m.
On 10/15/2013 12:42 AM, fantasticqhl wrote: > I am sure that the alignment is correct because the target and template > proteins are the same protein.
If the alignment is correct (i.e. the restraints generated from the alignment are correct) then the only other possibility is that you have user-defined restraints that are conflicting with the alignment-generated restraints. You can try modeling without them to see if that fixes things. If you can't figure it out, I can certainly look at your input files.
Ben Webb, Modeller Caretaker
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