Dear fellow MODELLERs
I have found that the problem mentioned by Tom Lee about modelling loops only occurs for the MSI version of MODELLER and not the academic version. I get around the problem by putting the following in the TOP file.:
INCLUDE DEFINE_STRING VARIABLES = LOOP_CSRFILE LOOP_INI_MODEL SET SEQUENCE = 'aaa' SET MODEL = 'aaa.pdb' # initial model of the target : :
The define_string... line is the only line to be added. I can't remember how I trouble-shot the problem as I fixed it a month ago.
I believe this will fix Dr Lee's problem.
Regards Rob
-- ----------------------------------------------------- Robert Jorissen
Ludwig Institute for Cancer Research P.O. BOX 2008, Royal Melbourne Hospital Parkville, Victoria 3050, Australia
phone: ++61-3-9341-3155 fax: ++61-3-9341-1938
e-mail: Robert.Jorissen@ludwig.edu.au -----------------------------------------------------